les_mis.py

import numpy as np

from bokeh.plotting import figure, output_file, show
from bokeh.sampledata.les_mis import data

nodes = data['nodes']
names = [node['name'] for node in sorted(data['nodes'], key=lambda x: x['group'])]

N = len(nodes)
counts = np.zeros((N, N))
for link in data['links']:
    counts[link['source'], link['target']] = link['value']
    counts[link['target'], link['source']] = link['value']

colormap = ["#444444", "#a6cee3", "#1f78b4", "#b2df8a", "#33a02c", "#fb9a99",
            "#e31a1c", "#fdbf6f", "#ff7f00", "#cab2d6", "#6a3d9a"]

xname = []
yname = []
color = []
alpha = []
for i, node1 in enumerate(nodes):
    for j, node2 in enumerate(nodes):
        xname.append(node1['name'])
        yname.append(node2['name'])

        alpha.append(min(counts[i,j]/4.0, 0.9) + 0.1)

        if node1['group'] == node2['group']:
            color.append(colormap[node1['group']])
        else:
            color.append('lightgrey')

data=dict(
    xname=xname,
    yname=yname,
    colors=color,
    alphas=alpha,
    count=counts.flatten(),
)

p = figure(title="Les Mis Occurrences",
           x_axis_location="above", tools="hover,save",
           x_range=list(reversed(names)), y_range=names,
           tooltips = [('names', '@yname, @xname'), ('count', '@count')])

p.width = 800
p.height = 800
p.grid.grid_line_color = None
p.axis.axis_line_color = None
p.axis.major_tick_line_color = None
p.axis.major_label_text_font_size = "7px"
p.axis.major_label_standoff = 0
p.xaxis.major_label_orientation = np.pi/3

p.rect('xname', 'yname', 0.9, 0.9, source=data,
       color='colors', alpha='alphas', line_color=None,
       hover_line_color='black', hover_color='colors')

output_file("les_mis.html", title="les_mis.py example")

show(p) # show the plot